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biological_systems:ref [Wednesday, 11 March 2009 : 11:26:01] (current)
s040995 created
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 +====== References ======
 +<​bibtex> ​
 +@article{1404877,​
 + ​author = {Higham,, Desmond J.},
 + title = {Modeling and Simulating Chemical Reactions},
 + ​journal = {SIAM Rev.},
 + ​volume = {50},
 + ​number = {2},
 + year = {2008},
 + issn = {0036-1445},​
 + pages = {347--368},
 + url = {http://​www.maths.strath.ac.uk/​~aas96106/​rep02_2007.pdf},​
 + ​publisher = {Society for Industrial and Applied Mathematics},​
 + ​address = {Philadelphia,​ PA, USA},
 + }
  
 +@article{,
 +  author = {Olaf Wolkenhauer},​
 +  title = {Systems biology - Dynamic pathway modeling},
 +  publisher = {},
 +  url =          {http://​www.sbi.uni-rostock.de/​dokumente/​t_sb.pdf},​
 +  year = 2008
 +}
 +
 +@article{,
 +  author = {Z. Zi and E. Klipp},
 +  title = {Steady state analysis of signal response in receptor trafficking networks},
 +  publisher = {GENOME INFORMATICS},​
 +  url =          {http://​www.jsbi.org/​modules/​journal1/​index.php/​IBSB07/​IBSB07010.pdf},​
 +  year = 2007
 +}
 +
 +@article{,
 +  author = {Nobu Ishiia and Yoshi Sugaa},
 +  title = {Dynamic simulation of an in vitro multi-enzyme system},
 +  publisher = {FEBS Letters},
 +  url =          {http://​www.sciencedirect.com/​science?​_ob=ArticleURL&​_udi=B6T36-4MT5T8K-1&​_user=499892&​_rdoc=1&​_fmt=&​_orig=search&​_sort=d&​view=c&​_acct=C000024518&​_version=1&​_urlVersion=0&​_userid=499892&​md5=1e3bc6bb5e565b39f60bdaefd1beef4e},​
 +  year = 2007
 +}
 +
 +
 +@book{Wilk06,​
 + author = {Wilkinson, D. J.},
 + title = {Stochastic modelling for systems biology},
 + year = {2006},
 +        publisher = {Chapman and Hall/CRC Press},
 +        address = {Boca Raton, Florida},
 +}
 +
 +@book{Law06,​
 + author = {Law, Averill ​ },
 + citeulike-article-id = {3085571},
 + edition = {4},
 + howpublished = {Hardcover},​
 + isbn = {0073294411},​
 + keywords = {2006, analysis, discrete-event,​ random-number,​ simulation, statistics},​
 + month = {July},
 + posted-at = {2008-08-05 14:19:30},
 + priority = {0},
 + publisher = {McGraw-Hill Science/​Engineering/​Math},​
 + title = {Simulation Modeling and Analysis with Expertfit Software},
 + url = {http://​www.amazon.ca/​exec/​obidos/​redirect?​tag=citeulike09-20\&​amp;​path=ASIN/​0073294411},​
 + year = {2006}
 +}
 +
 +@article{Kuhl06,​
 +  author = {Peter W. Kühl and Manfred Jobmann},
 +  title = {Receptor-Agonist Interactions in Service-Theoretic Perspective,​ Effects of Molecular Timing on the Shape of Dose-Response Curves },
 +  publisher = {Informa Healthcare, London},
 +  url =          {http://​pdfserve.informaworld.com/​77202_751311125_742026615.pdf},​
 +  year = 2006
 +}
 +
 +@article{,
 +  author = {M. Ullah and H. Schmidt,},
 +  title = {Deterministic modelling and stochastic simulation
 +of biochemical pathways using MATLAB},
 +    publisher = {IEE Proc.-Syst. Biol., Vol. 153, No. 2},
 +  url =          {http://​www.sciencedirect.com/​science?​_ob=ArticleURL&​_udi=B6T36-4MT5T8K-1&​_user=499892&​_rdoc=1&​_fmt=&​_orig=search&​_sort=d&​view=c&​_acct=C000024518&​_version=1&​_urlVersion=0&​_userid=499892&​md5=1e3bc6bb5e565b39f60bdaefd1beef4e},​
 +  year = 2006
 +}
 +
 +@article{,
 +  author = {S. C. Kou and B.J. Cherayil},
 +  title = {Single-Molecule Michaelis-Menten Equations},
 +  publisher = {J. Phys. Chem.},
 +  url  =         ​{http://​pubs.acs.org/​doi/​pdf/​10.1021/​jp051490q?​cookieSet=1},​
 +  year = 2005
 +}
 +
 +@article{Cao2004,​
 + author = {Y Cao, H Li, and L Petzold },
 + journal = {Journal of Chemical Physics},
 + pages = {4059-4067},​
 + title = {“Efficient formulation of the stochastic simulation algorithm for
 +chemically reacting systems”},​
 + volume = {121 (9)},
 + year = {2004},
 +        url = {http://​repositories.cdlib.org/​cgi/​viewcontent.cgi?​article=1268&​context=postprints},​
 +}
 +
 +@article{citeulike:​1224056,​
 +    address = {Amsterdam, The Netherlands,​ The Netherlands},​
 +    author = {Priami, Corrado ​  and Regev, Aviv   and Shapiro, Ehud   and Silverman, William ​ },
 +    citeulike-article-id = {1224056},
 +    doi = {http://​dx.doi.org/​10.1016/​S0020-0190(01)00214-9},​
 +    issn = {0020-0190},​
 +    journal = {Inf. Process. Lett.},
 +    keywords = {biology, modeling, process-algebra,​ systems-biology},​
 +    month = {October},
 +    number = {1},
 +    pages = {25--31},
 +    posted-at = {2007-04-13 13:27:43},
 +    priority = {3},
 +    publisher = {Elsevier North-Holland,​ Inc.},
 +    title = {Application of a stochastic name-passing calculus to representation and simulation of molecular processes},
 +    url = {http://​www.sciencedirect.com/​science?​_ob=MImg&​_imagekey=B6V0F-43VY9PD-4-2&​_cdi=5645&​_user=499892&​_orig=search&​_coverDate=10%2F15%2F2001&​_sk=999199998&​view=c&​wchp=dGLzVlz-zSkzS&​md5=d68fdb6eae88e5388d4683a1883ed6a9&​ie=/​sdarticle.pdf},​
 +    volume = {80},
 +    year = {2001}
 +}
 +
 +@article{
 +author = {Regev, A.  and Silverman, W.  and Shapiro, E. },
 + citeulike-article-id = {942077},
 + journal = {Pac Symp Biocomput},
 + keywords = {genettic-interactions},​
 + pages = {459--470},
 + posted-at = {2006-11-13 20:19:27},
 + priority = {2},
 + title = {Representation and simulation of biochemical processes using the pi-calculus process algebra.},
 + url = {http://​helix-web.stanford.edu/​psb01/​regev.pdf},​
 + year = {2001}
 +}
 +
 +
 +@article{Gill77,​
 + author = {Gillespie, D. T. },
 + journal = {The Journal of Physical Chemistry},
 + number = {25},
 + pages = {2340--2361},​
 + title = {Exact Stochastic Simulation of Coupled Chemical Reactions},
 + volume = {81},
 + year = {1977},
 +        url = {http://​www.cs.princeton.edu/​picasso/​seminarsS05/​Karig/​gillespie77.pdf},​
 +}
 +
 +
 +</​bibtex>​
biological_systems/ref.txt · Last modified: Wednesday, 11 March 2009 : 11:26:01 by s040995